Category theory offers a mathematical foundation for knowledge representation and database systems. Popular existing approaches model a database instance as a functor into the category of sets and functions, or as a 2-functor into the 2-category of sets, relations, and implications. The functional and relational models are unified by double functors into the double category of sets, functions, relations, and implications. In an accessible, example-driven style, we show that the abstract structure of a 'double category of relations' is a flexible and expressive language in which to represent knowledge, and we show how queries on data in the spirit of Codd's relational algebra are captured by double-functorial semantics.

Categories and categorical structures are increasingly recognized as useful abstractions for modeling in science and engineering. To uniformly implement category-theoretic mathematical models in software, we introduce GATlab, a domain-specific language for algebraic specification embedded in a technical programming language. GATlab is based on generalized algebraic theories (GATs), a logical system extending algebraic theories with dependent types so as to encompass category theory. Using GATlab, the programmer can specify generalized algebraic theories and their models, including both free models, based on symbolic expressions, and computational models, defined by arbitrary code in the host language. Moreover, the programmer can define maps between theories and use them to declaratively migrate models of one theory to models of another. In short, GATlab aims to provide a unified environment for both computer algebra and software interface design with generalized algebraic theories. In this paper, we describe the design, implementation, and applications of GATlab.

Organizing physics has been a long-standing preoccupation of applied category theory, going back at least to Lawvere. We contribute to this research thread by noticing that Hamiltonian mechanics and gradient descent depend crucially on a consistent choice of transformation -- which we call a reaction structure -- from the cotangent bundle to the tangent bundle. We then construct a compositional theory of reaction structures. Reaction-based systems offer a different perspective on composition in physics than port-Hamiltonian systems or open classical mechanics, in that reaction-based composition does not create any new constraints that must be solved for algebraically. The technical contributions of this paper are the development of symmetric monoidal categories of open energy-driven systems and open differential equations, and a functor between them, functioning as a "functorial semantics" for reaction structures. This approach echoes what has previously been done for open games and open gradient-based learners, and in fact subsumes the latter. We then illustrate our theory by constructing an $n$-fold pendulum as a composite of $n$-many pendula.

Classical planning representation languages based on first-order logic have preliminarily been used to model and solve robotic task planning problems. Wider adoption of these representation languages, however, is hindered by the limitations present when managing implicit world changes with concise action models. To address this problem, we propose an alternative approach to representing and managing updates to world states during planning. Based on the category-theoretic concepts of $\mathsf{C}$-sets and double-pushout rewriting (DPO), our proposed representation can effectively handle structured knowledge about world states that support domain abstractions at all levels. It formalizes the semantics of predicates according to a user-provided ontology and preserves the semantics when transitioning between world states. This method provides a formal semantics for using knowledge graphs and relational databases to model world states and updates in planning. In this paper, we conceptually compare our category-theoretic representation with the classical planning representation. We show that our proposed representation has advantages over the classical representation in terms of handling implicit preconditions and effects, and provides a more structured framework in which to model and solve planning problems.

We extract mathematical concepts from mathematical text using generative large language models (LLMs) like ChatGPT, contributing to the field of automatic term extraction (ATE) and mathematical text processing, and also to the study of LLMs themselves. Our work builds on that of others in that we aim for automatic extraction of terms (keywords) in one mathematical field, category theory, using as a corpus the 755 abstracts from a snapshot of the online journal "Theory and Applications of Categories", circa 2020. Where our study diverges from previous work is in (1) providing a more thorough analysis of what makes mathematical term extraction a difficult problem to begin with; (2) paying close attention to inter-annotator disagreements; (3) providing a set of guidelines which both human and machine annotators could use to standardize the extraction process; (4) introducing a new annotation tool to help humans with ATE, applicable to any mathematical field and even beyond mathematics; (5) using prompts to ChatGPT as part of the extraction process, and proposing best practices for such prompts; and (6) raising the question of whether ChatGPT could be used as an annotator on the same level as human experts. Our overall findings are that the matter of mathematical ATE is an interesting field which can benefit from participation by LLMs, but LLMs themselves cannot at this time surpass human performance on it.

We contribute a chapter in common to categorical database theory and to the study of higher morphisms between double categories. The common thread here is the notion of instance, or right module, which we generalize from functors from a plain category into Set to the models of a (cartesian) double theory. This provides a concept of instance for such objects as a category equipped with a monad, or a (symmetric) multicategory, recovering the multifunctors into Set in the latter case. We also show that instances of models are equivalent to an appropriate concept of discrete opfibration over that model, not recoverable as the representable discrete opfibrations in the 2-category of models. Finally, we give comprehensive factorization systems with these discrete opfibrations as the right class.

Mathematics is a highly specialized domain with its own unique set of challenges. Despite this, there has been relatively little research on natural language processing for mathematical texts, and there are few mathematical language resources aimed at NLP. In this paper, we aim to provide annotated corpora that can be used to study the language of mathematics in different contexts, ranging from fundamental concepts found in textbooks to advanced research mathematics. We preprocess the corpora with a neural parsing model and some manual intervention to provide part-of-speech tags, lemmas, and dependency trees. In total, we provide 182397 sentences across three corpora. We then aim to test and evaluate several noteworthy natural language processing models using these corpora, to show how well they can adapt to the domain of mathematics and provide useful tools for exploring mathematical language. We evaluate several neural and symbolic models against benchmarks that we extract from the corpus metadata to show that terminology extraction and definition extraction do not easily generalize to mathematics, and that additional work is needed to achieve good performance on these metrics. Finally, we provide a learning assistant that grants access to the content of these corpora in a context-sensitive manner, utilizing text search and entity linking. Though our corpora and benchmarks provide useful metrics for evaluating mathematical language processing, further work is necessary to adapt models to mathematics in order to provide more effective learning assistants and apply NLP methods to different mathematical domains.

This monograph is a study of the category of polynomial endofunctors on the category of sets and its applications to modeling interaction protocols and dynamical systems. We assume basic categorical background and build the categorical theory from the ground up, highlighting pictorical techniques and concrete examples to build intuition and provide applications.

Bayes' rule tells us how to invert a causal process in order to update our beliefs in light of new evidence. If the process is believed to have a complex compositional structure, we may observe that the inversion of the whole can be computed piecewise in terms of the component processes. We study the structure of this compositional rule, noting that it relates to the lens pattern in functional programming. Working in a suitably general axiomatic presentation of a category of Markov kernels, we see how we can think of Bayesian inversion as a particular instance of a state-dependent morphism in a fibred category. We discuss the compositional nature of this, formulated as a functor on the underlying category and explore how this can used for a more type-driven approach to statistical inference.

Dynamical systems are ubiquitous in science and engineering as models of phenomena that evolve over time. Although complex dynamical systems tend to have important modular structure, conventional modeling approaches suppress this structure. Building on recent work in applied category theory, we show how deterministic dynamical systems, discrete and continuous, can be composed in a hierarchical style. In mathematical terms, we reformulate some existing operads of wiring diagrams and introduce new ones, using the general formalism of C-sets (copresheaves). We then establish dynamical systems as algebras of these operads. In a computational vein, we show that Euler's method is functorial for undirected systems, extending a previous result for directed systems. All of the ideas in this paper are implemented as practical software using Catlab and the AlgebraicJulia ecosystem, written in the Julia programming language for scientific computing.

We present a categorical formulation of the cognitive frameworks of Predictive Processing and Active Inference, expressed in terms of string diagrams interpreted in a monoidal category with copying and discarding. This includes diagrammatic accounts of generative models, Bayesian updating, perception, planning, active inference, and free energy. In particular we present a diagrammatic derivation of the formula for active inference via free energy minimisation, and establish a compositionality property for free energy, allowing free energy to be applied at all levels of an agent's generative model. Aside from aiming to provide a helpful graphical language for those familiar with active inference, we conversely hope that this article may provide a concise formulation and introduction to the framework.

The discrete exterior calculus (DEC) defines a family of discretized differential operators which preserve certain desirable properties from the exterior calculus. We formulate and solve the porous convection equations in the DEC via the this http URL embedded domain-specific language (eDSL) for multiphysics problems discretized via this http URL. this http URL is an open-source Julia library which implements the DEC over simplicial complexes, and now offers a geometric multigrid solver over maps between subdivided simplicial complexes. We demonstrate numerical results of multigrid solvers for the Poisson problem and porous convection problem, both as a standalone solver and as a preconditioner for open-source Julia iterative methods libraries.

We classify all additive invariants of open Petri nets: these are $\mathbb{N}$-valued invariants which are additive with respect to sequential and parallel composition of open Petri nets. In particular, we prove two classification theorems: one for open Petri nets and one for monically open Petri nets (i.e. open Petri nets whose interfaces are specified by monic maps). Our results can be summarized as follows. The additive invariants of open Petri nets are completely determined by their values on a particular class of single-transition Petri nets. However, for monically open Petri nets, the additive invariants are determined by their values on transitionless Petri nets and all single-transition Petri nets. Our results confirm a conjecture of John Baez (stated during the AMS' 2022 Mathematical Research Communities workshop).

Mathematical modeling of real-world physical systems requires the consistent combination of a multitude of physical laws and phenomenological models. This challenging task can be greatly simplified by hierarchically decomposing systems into ultimately simple components. Moreover, the use of diagrams for expressing the decomposition helps make the process more intuitive and facilitates communication, even with non-experts. As an important requirement, models have to respect fundamental physical laws such as the first and the second law of thermodynamics. While some existing modeling frameworks make such guarantees based on structural properties of their models, they lack a formal graphical syntax. We present a compositional and thermodynamically consistent modeling language with a graphical syntax. In terms of its semantics, we essentially endow port-Hamiltonian systems with additional structural properties and a fixed physical interpretation, ensuring thermodynamic consistency in a manner closely related to the metriplectic or GENERIC formalism. While port-Hamiltonian systems are inspired by graphical modeling with bond graphs, neither the link between the two, nor bond graphs themselves, can be easily formalized. In contrast, our syntax is based on a refinement of the well-studied operad of undirected wiring diagrams. By combining a compositional, graphical syntax with an energy-based, thermodynamic approach, the presented modeling language simplifies the understanding, reuse, and modification of complex physical models.

Structured and decorated cospans are broadly applicable frameworks for building bicategories or double categories of open systems. We streamline and generalize these frameworks using central concepts of double category theory. We show that, under mild hypotheses, double categories of structured cospans are cocartesian (have finite double-categorical coproducts) and are equipments. The proofs are simple as they utilize appropriate double-categorical universal properties. Maps between double categories of structured cospans are studied from the same perspective. We then give a new construction of the double category of decorated cospans using the recently introduced double Grothendieck construction. Besides its conceptual value, this reconstruction leads to a natural generalization of decorated cospans, which we illustrate through an example motivated by statistical theories and other theories of processes.

The problem we want to solve is how to generate all theorems of a given size in the implicational fragment of propositional intuitionistic linear logic. We start by filtering for linearity the proof terms associated by our Prolog-based theorem prover for Implicational Intuitionistic Logic. This works, but using for each formula a PSPACE-complete algorithm limits it to very small formulas. We take a few walks back and forth over the bridge between proof terms and theorems, provided by the Curry-Howard isomorphism, and derive step-by-step an efficient algorithm requiring a low polynomial effort per generated theorem. The resulting Prolog program runs in O(N) space for terms of size N and generates in a few hours 7,566,084,686 theorems in the implicational fragment of Linear Intuitionistic Logic together with their proof terms in normal form. As applications, we generate datasets for correctness and scalability testing of linear logic theorem provers and training data for neural networks working on theorem proving challenges. The results in the paper, organized as a literate Prolog program, are fully replicable. Keywords: combinatorial generation of provable formulas of a given size, intuitionistic and linear logic theorem provers, theorems of the implicational fragment of propositional linear intuitionistic logic, Curry-Howard isomorphism, efficient generation of linear lambda terms in normal form, Prolog programs for lambda term generation and theorem proving.