We develop a comprehensive theoretical biophysics model grounded in a path
integral perspective and an m-sectorial open-system framework, to describe
complex, damped viral phonon dynamics in resource limited and noise driven
environments. By unifying wave mechanics (via PDEs with multiplicative noise),
Markov jumps for occupant or arrangement transitions, and second quantized
(Fock-space) expansions, our construction accommodates an unbounded number of
viral lattices in a single global wavefunction. In doing so, we capture how an
entire population potentially numbering in the millions may be represented by a
single operator theoretic state, or orbit, whose evolution is governed by
non-unitary semigroups with potential equilibrium or non equilibrium steady
states. This approach admits action functionals over the space of system
trajectories, enabling large deviation and flux analyses whenever detailed
balance is broken by sustained resource inputs, as often happens in real
infections.
Such a global wavefunction thus synthesizes PDE wavefront modes, occupant
transitions, and stochastically induced rearrangements into a single evolution
equation, capturing how local capsid vibrations might catalyze large scale
replication bursts, and vice versa. Our proofs show that, despite unbounded
occupant expansions or morphological continuums, solutions remain finite norm
over finite times. The well posedness extends to non-self-adjoint operators
with complex damping, irreversibility, and operator-valued-noise, thus
mirroring host constraints and immune factors that restrict virus
proliferation. Our formalism invites direct experimental cross validation, from
single virion tracking to population assays, and offers predictive insights for
resource limited replication, capsid reorganizations, and potential
intervention strategies in modern virology.