Accurate prediction of protein-ligand binding poses is crucial for structure-based drug design, yet existing methods struggle to balance speed, accuracy, and physical plausibility. We introduce Matcha, a novel molecular docking pipeline that combines multi-stage flow matching with learned scoring and physical validity filtering. Our approach consists of three sequential stages applied consecutively to refine docking predictions, each implemented as a flow matching model operating on appropriate geometric spaces ($\mathbb{R}^3$, $\mathrm{SO}(3)$, and $\mathrm{SO}(2)$). We enhance the prediction quality through a dedicated scoring model and apply unsupervised physical validity filters to eliminate unrealistic poses. Compared to various approaches, Matcha demonstrates superior performance on Astex and PDBbind test sets in terms of docking success rate and physical plausibility. Moreover, our method works approximately 25 times faster than modern large-scale co-folding models. The model weights and inference code to reproduce our results are available at this https URL.

Asynchronous Stochastic Gradient Descent (Asynchronous SGD) is a cornerstone method for parallelizing learning in distributed machine learning. However, its performance suffers under arbitrarily heterogeneous computation times across workers, leading to suboptimal time complexity and inefficiency as the number of workers scales. While several Asynchronous SGD variants have been proposed, recent findings by Tyurin & Richtárik (NeurIPS 2023) reveal that none achieve optimal time complexity, leaving a significant gap in the literature. In this paper, we propose Ringmaster ASGD, a novel Asynchronous SGD method designed to address these limitations and tame the inherent challenges of Asynchronous SGD. We establish, through rigorous theoretical analysis, that Ringmaster ASGD achieves optimal time complexity under arbitrarily heterogeneous and dynamically fluctuating worker computation times. This makes it the first Asynchronous SGD method to meet the theoretical lower bounds for time complexity in such scenarios.

Energy-based models (EBMs) are known in the Machine Learning community for decades. Since the seminal works devoted to EBMs dating back to the noughties, there have been a lot of efficient methods which solve the generative modelling problem by means of energy potentials (unnormalized likelihood functions). In contrast, the realm of Optimal Transport (OT) and, in particular, neural OT solvers is much less explored and limited by few recent works (excluding WGAN-based approaches which utilize OT as a loss function and do not model OT maps themselves). In our work, we bridge the gap between EBMs and Entropy-regularized OT. We present a novel methodology which allows utilizing the recent developments and technical improvements of the former in order to enrich the latter. From the theoretical perspective, we prove generalization bounds for our technique. In practice, we validate its applicability in toy 2D and image domains. To showcase the scalability, we empower our method with a pre-trained StyleGAN and apply it to high-res AFHQ $512\times 512$ unpaired I2I translation. For simplicity, we choose simple short- and long-run EBMs as a backbone of our Energy-guided Entropic OT approach, leaving the application of more sophisticated EBMs for future research. Our code is available at: this https URL

We propose Electrostatic Field Matching (EFM), a novel method that is suitable for both generative modeling and distribution transfer tasks. Our approach is inspired by the physics of an electrical capacitor. We place source and target distributions on the capacitor plates and assign them positive and negative charges, respectively. Then we learn the electrostatic field of the capacitor using a neural network approximator. To map the distributions to each other, we start at one plate of the capacitor and move the samples along the learned electrostatic field lines until they reach the other plate. We theoretically justify that this approach provably yields the distribution transfer. In practice, we demonstrate the performance of our EFM in toy and image data experiments. Our code is available at this https URL

Modern Video Large Language Models (VLLMs) often rely on uniform frame sampling for video understanding, but this approach frequently fails to capture critical information due to frame redundancy and variations in video content. We propose MaxInfo, a training-free method based on the maximum volume principle, which selects and retains the most representative frames from the input video. By maximizing the geometric volume formed by selected embeddings, MaxInfo ensures that the chosen frames cover the most informative regions of the embedding space, effectively reducing redundancy while preserving diversity. This method enhances the quality of input representations and improves long video comprehension performance across benchmarks. For instance, MaxInfo achieves a 3.28% improvement on LongVideoBench and a 6.4% improvement on EgoSchema for LLaVA-Video-7B. It also achieves a 3.47% improvement for LLaVA-Video-72B. The approach is simple to implement and works with existing VLLMs without the need for additional training, making it a practical and effective alternative to traditional uniform sampling methods.

This paper proposes a novel method, Explicit Flow Matching (ExFM), for training and analyzing flow-based generative models. ExFM leverages a theoretically grounded loss function, ExFM loss (a tractable form of Flow Matching (FM) loss), to demonstrably reduce variance during training, leading to faster convergence and more stable learning. Based on theoretical analysis of these formulas, we derived exact expressions for the vector field (and score in stochastic cases) for model examples (in particular, for separating multiple exponents), and in some simple cases, exact solutions for trajectories. In addition, we also investigated simple cases of diffusion generative models by adding a stochastic term and obtained an explicit form of the expression for score. While the paper emphasizes the theoretical underpinnings of ExFM, it also showcases its effectiveness through numerical experiments on various datasets, including high-dimensional ones. Compared to traditional FM methods, ExFM achieves superior performance in terms of both learning speed and final outcomes.