Reinforcement learning (RL) has emerged as a popular method for post-training large language models (LLMs). While improving the model's performance on downstream tasks, it often reduces the model's output diversity, leading to narrow, canonical responses. Existing methods to enhance diversity are limited, either by operating at inference time or by focusing on surface-level differences. We propose a novel training method named DQO (Diversity Quality Optimization) based on determinantal point processes (DPPs) to jointly optimize LLMs for quality and semantic diversity. Our approach samples and embeds a group of responses for each prompt, then uses the determinant of a kernel-based similarity matrix to measure diversity as the volume spanned by the embeddings of these responses. DQO is flexible and can be applied on top of existing RL algorithms. Experiments across instruction-following, summarization, story generation, and reasoning tasks demonstrate that our method substantially improves semantic diversity without sacrificing model quality.

Inference from tabular data, collections of continuous and categorical variables organized into matrices, is a foundation for modern technology and science. Yet, in contrast to the explosive changes in the rest of AI, the best practice for these predictive tasks has been relatively unchanged and is still primarily based on variations of Gradient Boosted Decision Trees (GBDTs). Very recently, there has been renewed interest in developing state-of-the-art methods for tabular data based on recent developments in neural networks and feature learning methods. In this work, we introduce xRFM, an algorithm that combines feature learning kernel machines with a tree structure to both adapt to the local structure of the data and scale to essentially unlimited amounts of training data. We show that compared to $31$ other methods, including recently introduced tabular foundation models (TabPFNv2) and GBDTs, xRFM achieves best performance across $100$ regression datasets and is competitive to the best methods across $200$ classification datasets outperforming GBDTs. Additionally, xRFM provides interpretability natively through the Average Gradient Outer Product.

Large language models (LLMs) hold great promise for medical applications and are evolving rapidly, with new models being released at an accelerated pace. However, benchmarking on large-scale real-world data such as electronic health records (EHRs) is critical, as clinical decisions are directly informed by these sources, yet current evaluations remain limited. Most existing benchmarks rely on medical exam-style questions or PubMed-derived text, failing to capture the complexity of real-world clinical data. Others focus narrowly on specific application scenarios, limiting their generalizability across broader clinical use. To address this gap, we present BRIDGE, a comprehensive multilingual benchmark comprising 87 tasks sourced from real-world clinical data sources across nine languages. It covers eight major task types spanning the entire continuum of patient care across six clinical stages and 20 representative applications, including triage and referral, consultation, information extraction, diagnosis, prognosis, and billing coding, and involves 14 clinical specialties. We systematically evaluated 95 LLMs (including DeepSeek-R1, GPT-4o, Gemini series, and Qwen3 series) under various inference strategies. Our results reveal substantial performance variation across model sizes, languages, natural language processing tasks, and clinical specialties. Notably, we demonstrate that open-source LLMs can achieve performance comparable to proprietary models, while medically fine-tuned LLMs based on older architectures often underperform versus updated general-purpose models. The BRIDGE and its corresponding leaderboard serve as a foundational resource and a unique reference for the development and evaluation of new LLMs in real-world clinical text understanding. The BRIDGE leaderboard: this https URL

Background: Structural variants (SVs) are genomic differences $\ge$50 bp in length. They remain challenging to detect even with long sequence reads, and the sources of these difficulties are not well quantified. Results: We identified 35.4 Mb of low-complexity regions (LCRs) in GRCh38. Although these regions cover only 1.2% of the genome, they contain 69.1% of confident SVs in sample HG002. Across long-read SV callers, 77.3-91.3% of erroneous SV calls occur within LCRs, with error rates increasing with LCR length. Conclusion: SVs are enriched and difficult to call in LCRs. Special care need to be taken for calling and analyzing these variants.

A digital twin is a virtual replica of a real-world physical phenomena that uses mathematical modeling to characterize and simulate its defining features. By constructing digital twins for disease processes, we can perform in-silico simulations that mimic patients' health conditions and counterfactual outcomes under hypothetical interventions in a virtual setting. This eliminates the need for invasive procedures or uncertain treatment decisions. In this paper, we propose a method to identify digital twin model parameters using only noninvasive patient health data. We approach the digital twin modeling as a composite inverse problem, and observe that its structure resembles pretraining and finetuning in self-supervised learning (SSL). Leveraging this, we introduce a physics-informed SSL algorithm that initially pretrains a neural network on the pretext task of learning a differentiable simulator of a physiological process. Subsequently, the model is trained to reconstruct physiological measurements from noninvasive modalities while being constrained by the physical equations learned in pretraining. We apply our method to identify digital twins of cardiac hemodynamics using noninvasive echocardiogram videos, and demonstrate its utility in unsupervised disease detection and in-silico clinical trials.

As post hoc explanations are increasingly used to understand the behavior of graph neural networks (GNNs), it becomes crucial to evaluate the quality and reliability of GNN explanations. However, assessing the quality of GNN explanations is challenging as existing graph datasets have no or unreliable ground-truth explanations for a given task. Here, we introduce a synthetic graph data generator, ShapeGGen, which can generate a variety of benchmark datasets (e.g., varying graph sizes, degree distributions, homophilic vs. heterophilic graphs) accompanied by ground-truth explanations. Further, the flexibility to generate diverse synthetic datasets and corresponding ground-truth explanations allows us to mimic the data generated by various real-world applications. We include ShapeGGen and several real-world graph datasets into an open-source graph explainability library, GraphXAI. In addition to synthetic and real-world graph datasets with ground-truth explanations, GraphXAI provides data loaders, data processing functions, visualizers, GNN model implementations, and evaluation metrics to benchmark the performance of GNN explainability methods.

Modern AI models contain much of human knowledge, yet understanding of their internal representation of this knowledge remains elusive. Characterizing the structure and properties of this representation will lead to improvements in model capabilities and development of effective safeguards. Building on recent advances in feature learning, we develop an effective, scalable approach for extracting linear representations of general concepts in large-scale AI models (language models, vision-language models, and reasoning models). We show how these representations enable model steering, through which we expose vulnerabilities, mitigate misaligned behaviors, and improve model capabilities. Additionally, we demonstrate that concept representations are remarkably transferable across human languages and combinable to enable multi-concept steering. Through quantitative analysis across hundreds of concepts, we find that newer, larger models are more steerable and steering can improve model capabilities beyond standard prompting. We show how concept representations are effective for monitoring misaligned content (hallucinations, toxic content). We demonstrate that predictive models built using concept representations are more accurate for monitoring misaligned content than using models that judge outputs directly. Together, our results illustrate the power of using internal representations to map the knowledge in AI models, advance AI safety, and improve model capabilities.

We study the problem active sequential hypothesis testing, also known as pure exploration: given a new task, the learner adaptively collects data from the environment to efficiently determine an underlying correct hypothesis. A classical instance of this problem is the task of identifying the best arm in a multi-armed bandit problem (a.k.a. BAI, Best-Arm Identification), where actions index hypotheses. Another important case is generalized search, a problem of determining the correct label through a sequence of strategically selected queries that indirectly reveal information about the label. In this work, we introduce In-Context Pure Exploration (ICPE), which meta-trains Transformers to map observation histories to query actions and a predicted hypothesis, yielding a model that transfers in-context. At inference time, ICPE actively gathers evidence on new tasks and infers the true hypothesis without parameter updates. Across deterministic, stochastic, and structured benchmarks, including BAI and generalized search, ICPE is competitive with adaptive baselines while requiring no explicit modeling of information structure. Our results support Transformers as practical architectures for general sequential testing.

Artificial intelligence for graphs has achieved remarkable success in modeling complex systems, ranging from dynamic networks in biology to interacting particle systems in physics. However, the increasingly heterogeneous graph datasets call for multimodal methods that can combine different inductive biases: the set of assumptions that algorithms use to make predictions for inputs they have not encountered during training. Learning on multimodal datasets presents fundamental challenges because the inductive biases can vary by data modality and graphs might not be explicitly given in the input. To address these challenges, multimodal graph AI methods combine different modalities while leveraging cross-modal dependencies using graphs. Diverse datasets are combined using graphs and fed into sophisticated multimodal architectures, specified as image-intensive, knowledge-grounded and language-intensive models. Using this categorization, we introduce a blueprint for multimodal graph learning, use it to study existing methods and provide guidelines to design new models.