Systematic reviews are crucial for evidence-based medicine as they comprehensively analyse published research findings on specific questions. Conducting such reviews is often resource- and time-intensive, especially in the screening phase, where abstracts of publications are assessed for inclusion in a review. This study investigates the effectiveness of using zero-shot large language models~(LLMs) for automatic screening. We evaluate the effectiveness of eight different LLMs and investigate a calibration technique that uses a predefined recall threshold to determine whether a publication should be included in a systematic review. Our comprehensive evaluation using five standard test collections shows that instruction fine-tuning plays an important role in screening, that calibration renders LLMs practical for achieving a targeted recall, and that combining both with an ensemble of zero-shot models saves significant screening time compared to state-of-the-art approaches.

Accurately tracking the global distribution and evolution of precipitation is essential for both research and operational meteorology. Satellite observations remain the only means of achieving consistent, global-scale precipitation monitoring. While machine learning has long been applied to satellite-based precipitation retrieval, the absence of a standardized benchmark dataset has hindered fair comparisons between methods and limited progress in algorithm development. To address this gap, the International Precipitation Working Group has developed SatRain, the first AI-ready benchmark dataset for satellite-based detection and estimation of rain, snow, graupel, and hail. SatRain includes multi-sensor satellite observations representative of the major platforms currently used in precipitation remote sensing, paired with high-quality reference estimates from ground-based radars corrected using rain gauge measurements. It offers a standardized evaluation protocol to enable robust and reproducible comparisons across machine learning approaches. In addition to supporting algorithm evaluation, the diversity of sensors and inclusion of time-resolved geostationary observations make SatRain a valuable foundation for developing next-generation AI models to deliver more accurate, detailed, and globally consistent precipitation estimates.

Structural biology has long been dominated by the one sequence, one structure, one function paradigm, yet many critical biological processes - from enzyme catalysis to membrane transport - depend on proteins that adopt multiple conformational states. Existing multi-state design approaches rely on post-hoc aggregation of single-state predictions, achieving poor experimental success rates compared to single-state design. We introduce DynamicMPNN, an inverse folding model explicitly trained to generate sequences compatible with multiple conformations through joint learning across conformational ensembles. Trained on 46,033 conformational pairs covering 75% of CATH superfamilies and evaluated using Alphafold 3, DynamicMPNN outperforms ProteinMPNN by up to 25% on decoy-normalized RMSD and by 12% on sequence recovery across our challenging multi-state protein benchmark.

We study a fitting problem inspired by ontology-mediated querying: given a collection of positive and negative examples of the form $(\mathcal{A},q)$ with $\mathcal{A}$ an ABox and $q$ a Boolean query, we seek an ontology $\mathcal{O}$ that satisfies $\mathcal{A} \cup \mathcal{O} \vDash q$ for all positive examples and $\mathcal{A} \cup \mathcal{O}\not\vDash q$ for all negative examples. We consider the description logics $\mathcal{ALC}$ and $\mathcal{ALCI}$ as ontology languages and a range of query languages that includes atomic queries (AQs), conjunctive queries (CQs), and unions thereof (UCQs). For all of the resulting fitting problems, we provide effective characterizations and determine the computational complexity of deciding whether a fitting ontology exists. This problem turns out to be ${\small CO}NP$ for AQs and full CQs and $2E{\small XP}T{\small IME}$-complete for CQs and UCQs. These results hold for both $\mathcal{ALC}$ and $\mathcal{ALCI}$.

Plant traits such as leaf carbon content and leaf mass are essential variables in the study of biodiversity and climate change. However, conventional field sampling cannot feasibly cover trait variation at ecologically meaningful spatial scales. Machine learning represents a valuable solution for plant trait prediction across ecosystems, leveraging hyperspectral data from remote sensing. Nevertheless, trait prediction from hyperspectral data is challenged by label scarcity and substantial domain shifts (\eg across sensors, ecological distributions), requiring robust cross-domain methods. Here, we present GreenHyperSpectra, a pretraining dataset encompassing real-world cross-sensor and cross-ecosystem samples designed to benchmark trait prediction with semi- and self-supervised methods. We adopt an evaluation framework encompassing in-distribution and out-of-distribution scenarios. We successfully leverage GreenHyperSpectra to pretrain label-efficient multi-output regression models that outperform the state-of-the-art supervised baseline. Our empirical analyses demonstrate substantial improvements in learning spectral representations for trait prediction, establishing a comprehensive methodological framework to catalyze research at the intersection of representation learning and plant functional traits assessment. All code and data are available at: this https URL.

The exponential growth of scientific publications has made it increasingly difficult for researchers to stay updated and synthesize knowledge effectively. This paper presents XSum, a modular pipeline for multi-document summarization (MDS) in the scientific domain using Retrieval-Augmented Generation (RAG). The pipeline includes two core components: a question-generation module and an editor module. The question-generation module dynamically generates questions adapted to the input papers, ensuring the retrieval of relevant and accurate information. The editor module synthesizes the retrieved content into coherent and well-structured summaries that adhere to academic standards for proper citation. Evaluated on the SurveySum dataset, XSum demonstrates strong performance, achieving considerable improvements in metrics such as CheckEval, G-Eval and Ref-F1 compared to existing approaches. This work provides a transparent, adaptable framework for scientific summarization with potential applications in a wide range of domains. Code available at this https URL

Climate hazards can escalate into humanitarian disasters. Understanding their trajectories -- considering hazard intensity, human exposure, and societal vulnerability -- is essential for effective anticipatory action. The International Disaster Database (EM-DAT) is the only freely available global resource of humanitarian disaster records. However, it lacks exact geospatial information, limiting its use for climate hazard impact research. Here, we provide geocoding of 9,217 climate-related disasters reported by EM-DAT from 1990 to 2023, along with an open, reproducible framework for updating. Our method remains accurate even when only region names are available and includes quality flags to assess reliability. The augmented EM-DAT enables integration with other geocoded data, supporting more accurate assessment of climate disaster impacts and adaptation deficits.

As language models grow ever larger, the need for large-scale high-quality text datasets has never been more pressing, especially in multilingual settings. The BigScience workshop, a 1-year international and multidisciplinary initiative, was formed with the goal of researching and training large language models as a values-driven undertaking, putting issues of ethics, harm, and governance in the foreground. This paper documents the data creation and curation efforts undertaken by BigScience to assemble the Responsible Open-science Open-collaboration Text Sources (ROOTS) corpus, a 1.6TB dataset spanning 59 languages that was used to train the 176-billion-parameter BigScience Large Open-science Open-access Multilingual (BLOOM) language model. We further release a large initial subset of the corpus and analyses thereof, and hope to empower large-scale monolingual and multilingual modeling projects with both the data and the processing tools, as well as stimulate research around this large multilingual corpus.

Cross-encoders distilled from large language models (LLMs) are often more effective re-rankers than cross-encoders fine-tuned on manually labeled data. However, distilled models do not match the effectiveness of their teacher LLMs. We hypothesize that this effectiveness gap is due to the fact that previous work has not applied the best-suited methods for fine-tuning cross-encoders on manually labeled data (e.g., hard-negative sampling, deep sampling, and listwise loss functions). To close this gap, we create a new dataset, Rank-DistiLLM. Cross-encoders trained on Rank-DistiLLM achieve the effectiveness of LLMs while being up to 173 times faster and 24 times more memory efficient. Our code and data is available at this https URL

Human annotations of mood in music are essential for music generation and recommender systems. However, existing datasets predominantly focus on Western songs with terms derived from English, which may limit generalizability across diverse linguistic and cultural backgrounds. We introduce 'GlobalMood', a novel cross-cultural benchmark dataset comprising 1,180 songs sampled from 59 countries, with large-scale annotations collected from 2,519 individuals across five culturally and linguistically distinct locations: U.S., France, Mexico, S. Korea, and Egypt. Rather than imposing predefined emotion and mood categories, we implement a bottom-up, participant-driven approach to organically elicit culturally specific music-related emotion terms. We then recruit another pool of human participants to collect 988,925 ratings for these culture-specific descriptors. Our analysis confirms the presence of a valence-arousal structure shared across cultures, yet also reveals significant divergences in how certain emotion terms (despite being dictionary equivalents) are perceived cross-culturally. State-of-the-art multimodal models benefit substantially from fine-tuning on our cross-culturally balanced dataset, particularly in non-English contexts. Broadly, our findings inform the ongoing debate on the universality versus cultural specificity of emotional descriptors, and our methodology can contribute to other multimodal and cross-lingual research.

While deep reinforcement learning agents demonstrate high performance across domains, their internal decision processes remain difficult to interpret when evaluated only through performance metrics. In particular, it is poorly understood which input features agents rely on, how these dependencies evolve during training, and how they relate to behavior. We introduce a scientific methodology for analyzing the learning process through quantitative analysis of saliency. This approach aggregates saliency information at the object and modality level into hierarchical attention profiles, quantifying how agents allocate attention over time, thereby forming attention trajectories throughout training. Applied to Atari benchmarks, custom Pong environments, and muscle-actuated biomechanical user simulations in visuomotor interactive tasks, this methodology uncovers algorithm-specific attention biases, reveals unintended reward-driven strategies, and diagnoses overfitting to redundant sensory channels. These patterns correspond to measurable behavioral differences, demonstrating empirical links between attention profiles, learning dynamics, and agent behavior. To assess robustness of the attention profiles, we validate our findings across multiple saliency methods and environments. The results establish attention trajectories as a promising diagnostic axis for tracing how feature reliance develops during training and for identifying biases and vulnerabilities invisible to performance metrics alone.

Generating animal faces using generative AI techniques is challenging because the available training images are limited both in quantity and variation, particularly for facial expressions across individuals. In this study, we focus on macaque monkeys, widely studied in systems neuroscience and evolutionary research, and propose a method to generate their facial expressions using a style-based generative image model (i.e., StyleGAN2). To address data limitations, we implemented: 1) data augmentation by synthesizing new facial expression images using a motion transfer to animate still images with computer graphics, 2) sample selection based on the latent representation of macaque faces from an initially trained StyleGAN2 model to ensure the variation and uniform sampling in training dataset, and 3) loss function refinement to ensure the accurate reproduction of subtle movements, such as eye movements. Our results demonstrate that the proposed method enables the generation of diverse facial expressions for multiple macaque individuals, outperforming models trained solely on original still images. Additionally, we show that our model is effective for style-based image editing, where specific style parameters correspond to distinct facial movements. These findings underscore the model's potential for disentangling motion components as style parameters, providing a valuable tool for research on macaque facial expressions.