Sharing and reusing research artifacts, such as datasets, publications, or methods is a fundamental part of scientific activity, where heterogeneity of resources and metadata and the common practice of capturing information in unstructured publications pose crucial challenges. Reproducibility of research and finding state-of-the-art methods or data have become increasingly challenging. In this context, the concept of Research Knowledge Graphs (RKGs) has emerged, aiming at providing an easy to use and machine-actionable representation of research artifacts and their relations. That is facilitated through the use of established principles for data representation, the consistent adoption of globally unique persistent identifiers and the reuse and linking of vocabularies and data. This paper provides the first conceptualisation of the RKG vision, a categorisation of in-use RKGs together with a description of RKG building blocks and principles. We also survey real-world RKG implementations differing with respect to scale, schema, data, used vocabulary, and reliability of the contained data. We also characterise different RKG construction methodologies and provide a forward-looking perspective on the diverse applications, opportunities, and challenges associated with the RKG vision.

Cultural phylogenies, or "trees" of culture, are typically built using methods from biology that use similarities and differences in artifacts to infer the historical relationships between the populations that produced them. While these methods have yielded important insights, particularly in linguistics, researchers continue to debate the extent to which cultural phylogenies are tree-like or reticulated due to high levels of horizontal transmission. In this study, we propose a novel method for phylogenetic reconstruction using dynamic community detection that explicitly accounts for transmission between lineages. We used data from 1,498,483 collaborative relationships between electronic music artists to construct a cultural phylogeny based on observed population structure. The results suggest that, although the phylogeny is fundamentally tree-like, horizontal transmission is common and populations never become fully isolated from one another. In addition, we found evidence that electronic music diversity has increased between 1975 and 1999. The method used in this study is available as a new R package called DynCommPhylo. Future studies should apply this method to other cultural systems such as academic publishing and film, as well as biological systems where high resolution reproductive data is available, to assess how levels of reticulation in evolution vary across domains.

In this paper, we deal with bias mitigation techniques that remove specific data points from the training set to aim for a fair representation of the population in that set. Machine learning models are trained on these pre-processed datasets, and their predictions are expected to be fair. However, such approaches may exclude relevant data, making the attained subsets less trustworthy for further usage. To enhance the trustworthiness of prior methods, we propose additional requirements and objectives that the subsets must fulfill in addition to fairness: (1) group coverage, and (2) minimal data loss. While removing entire groups may improve the measured fairness, this practice is very problematic as failing to represent every group cannot be considered fair. In our second concern, we advocate for the retention of data while minimizing discrimination. By introducing a multi-objective optimization problem that considers fairness and data loss, we propose a methodology to find Pareto-optimal solutions that balance these objectives. By identifying such solutions, users can make informed decisions about the trade-off between fairness and data quality and select the most suitable subset for their application. Our method is distributed as a Python package via PyPI under the name FairDo (this https URL).

We present a general methodology that learns to classify images without labels by leveraging pretrained feature extractors. Our approach involves self-distillation training of clustering heads based on the fact that nearest neighbours in the pretrained feature space are likely to share the same label. We propose a novel objective that learns associations between image features by introducing a variant of pointwise mutual information together with instance weighting. We demonstrate that the proposed objective is able to attenuate the effect of false positive pairs while efficiently exploiting the structure in the pretrained feature space. As a result, we improve the clustering accuracy over $k$-means on $17$ different pretrained models by $6.1$\% and $12.2$\% on ImageNet and CIFAR100, respectively. Finally, using self-supervised vision transformers, we achieve a clustering accuracy of $61.6$\% on ImageNet. The code is available at this https URL.

This research focuses on evaluating and enhancing data readiness for the development of an Artificial Intelligence (AI)-based Clinical Decision Support System (CDSS) in the context of skin cancer treatment. The study, conducted at the Skin Tumor Center of the University Hospital M\"unster, delves into the essential role of data quality, availability, and extractability in implementing effective AI applications in oncology. By employing a multifaceted methodology, including literature review, data readiness assessment, and expert workshops, the study addresses the challenges of integrating AI into clinical decision-making. The research identifies crucial data points for skin cancer treatment decisions, evaluates their presence and quality in various information systems, and highlights the difficulties in extracting information from unstructured data. The findings underline the significance of high-quality, accessible data for the success of AI-driven CDSS in medical settings, particularly in the complex field of oncology.

Recent developments in the registration of histology and micro-computed tomography ({\mu}CT) have broadened the perspective of pathological applications such as virtual histology based on {\mu}CT. This topic remains challenging because of the low image quality of soft tissue CT. Additionally, soft tissue samples usually deform during the histology slide preparation, making it difficult to correlate the structures between histology slide and {\mu}CT. In this work, we propose a novel 2D-3D multi-modal deformable image registration method. The method uses a machine learning (ML) based initialization followed by the registration. The registration is finalized by an analytical out-of-plane deformation refinement. The method is evaluated on datasets acquired from tonsil and tumor tissues. {\mu}CTs of both phase-contrast and conventional absorption modalities are investigated. The registration results from the proposed method are compared with those from intensity- and keypoint-based methods. The comparison is conducted using both visual and fiducial-based evaluations. The proposed method demonstrates superior performance compared to the other two methods.

Sequential recommender systems (SRSs) aim to suggest next item for a user based on her historical interaction sequences. Recently, many research efforts have been devoted to attenuate the influence of noisy items in sequences by either assigning them with lower attention weights or discarding them directly. The major limitation of these methods is that the former would still prone to overfit noisy items while the latter may overlook informative items. To the end, in this paper, we propose a novel model named Multi-level Sequence Denoising with Cross-signal Contrastive Learning (MSDCCL) for sequential recommendation. To be specific, we first introduce a target-aware user interest extractor to simultaneously capture users' long and short term interest with the guidance of target items. Then, we develop a multi-level sequence denoising module to alleviate the impact of noisy items by employing both soft and hard signal denoising strategies. Additionally, we extend existing curriculum learning by simulating the learning pattern of human beings. It is worth noting that our proposed model can be seamlessly integrated with a majority of existing recommendation models and significantly boost their effectiveness. Experimental studies on five public datasets are conducted and the results demonstrate that the proposed MSDCCL is superior to the state-of-the-art baselines. The source code is publicly available at this https URL.

We present a new optical scheme enabling the implementation of highly stable and configurable non-Markovian dynamics. Here one photon qubit can circulate in a multipass bulk geometry consisting of two concatenated Sagnac interferometers to simulate the so called collisional model, where the system interacts at discrete times with a vacuum environment. We show the optical features of our apparatus and three different implementations of it, replicating a pure Markovian scenario and two non-Markovian ones, where we quantify the information backflow by tracking the evolution of the initial entanglement between the system photon and an ancillary one.

Classifying samples as in-distribution or out-of-distribution (OOD) is a challenging problem of anomaly detection and a strong test of the generalisation power for models of the in-distribution. In this paper, we present a simple and generic framework, {\it SemSAD}, that makes use of a semantic similarity score to carry out anomaly detection. The idea is to first find for any test example the semantically closest examples in the training set, where the semantic relation between examples is quantified by the cosine similarity between feature vectors that leave semantics unchanged under transformations, such as geometric transformations (images), time shifts (audio signals), and synonymous word substitutions (text). A trained discriminator is then used to classify a test example as OOD if the semantic similarity to its nearest neighbours is significantly lower than the corresponding similarity for test examples from the in-distribution. We are able to outperform previous approaches for anomaly, novelty, or out-of-distribution detection in the visual domain by a large margin. In particular, we obtain AUROC values close to one for the challenging task of detecting examples from CIFAR-10 as out-of-distribution given CIFAR-100 as in-distribution, without making use of label information.

The reason behind the unfair outcomes of AI is often rooted in biased datasets. Therefore, this work presents a framework for addressing fairness by debiasing datasets containing a (non-)binary protected attribute. The framework proposes a combinatorial optimization problem where heuristics such as genetic algorithms can be used to solve for the stated fairness objectives. The framework addresses this by finding a data subset that minimizes a certain discrimination measure. Depending on a user-defined setting, the framework enables different use cases, such as data removal, the addition of synthetic data, or exclusive use of synthetic data. The exclusive use of synthetic data in particular enhances the framework's ability to preserve privacy while optimizing for fairness. In a comprehensive evaluation, we demonstrate that under our framework, genetic algorithms can effectively yield fairer datasets compared to the original data. In contrast to prior work, the framework exhibits a high degree of flexibility as it is metric- and task-agnostic, can be applied to both binary or non-binary protected attributes, and demonstrates efficient runtime.

In this paper, we describe our submission to the BabyLM Challenge 2023 shared task on data-efficient language model (LM) pretraining (Warstadt et al., 2023). We train transformer-based masked language models that incorporate unsupervised predictions about hierarchical sentence structure into the model architecture. Concretely, we use the Structformer architecture (Shen et al., 2021) and variants thereof. StructFormer models have been shown to perform well on unsupervised syntactic induction based on limited pretraining data, and to yield performance improvements over a vanilla transformer architecture (Shen et al., 2021). Evaluation of our models on 39 tasks provided by the BabyLM challenge shows promising improvements of models that integrate a hierarchical bias into the architecture at some particular tasks, even though they fail to consistently outperform the RoBERTa baseline model provided by the shared task organizers on all tasks.

The effectiveness of search systems is evaluated using relevance labels that indicate the usefulness of documents for specific queries and users. While obtaining these relevance labels from real users is ideal, scaling such data collection is challenging. Consequently, third-party annotators are employed, but their inconsistent accuracy demands costly auditing, training, and monitoring. We propose an LLM-based modular classification pipeline that divides the relevance assessment task into multiple stages, each utilising different prompts and models of varying sizes and capabilities. Applied to TREC Deep Learning (TREC-DL), one of our approaches showed an 18.4% Krippendorff's $\alpha$ accuracy increase over OpenAI's GPT-4o mini while maintaining a cost of about 0.2 USD per million input tokens, offering a more efficient and scalable solution for relevance assessment. This approach beats the baseline performance of GPT-4o (5 USD). With a pipeline approach, even the accuracy of the GPT-4o flagship model, measured in $\alpha$, could be improved by 9.7%.

In recent years, research unveiled more and more evidence for the so-called Bayesian Brain Paradigm, i.e. the human brain is interpreted as a probabilistic inference machine and Bayesian modelling approaches are hence used successfully. One of the many theories is that of Probabilistic Population Codes (PPC). Although this model has so far only been considered as meaningful and useful for sensory perception as well as motor control, it has always been suggested that this mechanism also underlies higher cognition and decision-making. However, the adequacy of PPC for this regard cannot be confirmed by means of neurological standard measurement procedures. In this article we combine the parallel research branches of recommender systems and predictive data mining with theoretical neuroscience. The nexus of both fields is given by behavioural variability and resulting internal distributions. We adopt latest experimental settings and measurement approaches from predictive data mining to obtain these internal distributions, to inform the theoretical PPC approach and to deduce medical correlates which can indeed be measured in vivo. This is a strong hint for the applicability of the PPC approach and the Bayesian Brain Paradigm for higher cognition and human decision-making.

Despite the immense societal importance of ethically designing artificial intelligence (AI), little research on the public perceptions of ethical AI principles exists. This becomes even more striking when considering that ethical AI development has the aim to be human-centric and of benefit for the whole society. In this study, we investigate how ethical principles (explainability, fairness, security, accountability, accuracy, privacy, machine autonomy) are weighted in comparison to each other. This is especially important, since simultaneously considering ethical principles is not only costly, but sometimes even impossible, as developers must make specific trade-off decisions. In this paper, we give first answers on the relative importance of ethical principles given a specific use case - the use of AI in tax fraud detection. The results of a large conjoint survey (n=1099) suggest that, by and large, German respondents found the ethical principles equally important. However, subsequent cluster analysis shows that different preference models for ethically designed systems exist among the German population. These clusters substantially differ not only in the preferred attributes, but also in the importance level of the attributes themselves. We further describe how these groups are constituted in terms of sociodemographics as well as opinions on AI. Societal implications as well as design challenges are discussed.

Metagenomics characterizes microbial communities by random shotgun sequencing of DNA isolated directly from an environment of interest. An essential step in computational metagenome analysis is taxonomic sequence assignment, which allows us to identify the sequenced community members and to reconstruct taxonomic bins with sequence data for the individual taxa. We describe an algorithm and the accompanying software, taxator-tk, which performs taxonomic sequence assignments by fast approximate determination of evolutionary neighbors from sequence similarities. Taxator-tk was precise in its taxonomic assignment across all ranks and taxa for a range of evolutionary distances and for short sequences. In addition to the taxonomic binning of metagenomes, it is well suited for profiling microbial communities from metagenome samples becauseit identifies bacterial, archaeal and eukaryotic community members without being affected by varying primer binding strengths, as in marker gene amplification, or copy number variations of marker genes across different taxa. Taxator-tk has an efficient, parallelized implementation that allows the assignment of 6 Gb of sequence data per day on a standard multiprocessor system with ten CPU cores and microbial RefSeq as the genomic reference data.

We present a comprehensive experimental study on pretrained feature extractors for visual out-of-distribution (OOD) detection, focusing on adapting contrastive language-image pretrained (CLIP) models. Without fine-tuning on the training data, we are able to establish a positive correlation ($R^2\geq0.92$) between in-distribution classification and unsupervised OOD detection for CLIP models in $4$ benchmarks. We further propose a new simple and scalable method called \textit{pseudo-label probing} (PLP) that adapts vision-language models for OOD detection. Given a set of label names of the training set, PLP trains a linear layer using the pseudo-labels derived from the text encoder of CLIP. To test the OOD detection robustness of pretrained models, we develop a novel feature-based adversarial OOD data manipulation approach to create adversarial samples. Intriguingly, we show that (i) PLP outperforms the previous state-of-the-art \citep{ming2022mcm} on all $5$ large-scale benchmarks based on ImageNet, specifically by an average AUROC gain of 3.4\% using the largest CLIP model (ViT-G), (ii) we show that linear probing outperforms fine-tuning by large margins for CLIP architectures (i.e. CLIP ViT-H achieves a mean gain of 7.3\% AUROC on average on all ImageNet-based benchmarks), and (iii) billion-parameter CLIP models still fail at detecting adversarially manipulated OOD images. The code and adversarially created datasets will be made publicly available.

A measure of primal importance for capturing the serial dependence of a stationary time series at extreme levels is provided by the limiting cluster size distribution. New estimators based on a blocks declustering scheme are proposed and analyzed both theoretically and by means of a large-scale simulation study. A sliding blocks version of the estimators is shown to outperform a disjoint blocks version. In contrast to some competitors from the literature, the estimators only depend on one unknown parameter to be chosen by the statistician.

Text simplification is an intralingual translation task in which documents, or sentences of a complex source text are simplified for a target audience. The success of automatic text simplification systems is highly dependent on the quality of parallel data used for training and evaluation. To advance sentence simplification and document simplification in German, this paper presents DEplain, a new dataset of parallel, professionally written and manually aligned simplifications in plain German ("plain DE" or in German: "Einfache Sprache"). DEplain consists of a news domain (approx. 500 document pairs, approx. 13k sentence pairs) and a web-domain corpus (approx. 150 aligned documents, approx. 2k aligned sentence pairs). In addition, we are building a web harvester and experimenting with automatic alignment methods to facilitate the integration of non-aligned and to be published parallel documents. Using this approach, we are dynamically increasing the web domain corpus, so it is currently extended to approx. 750 document pairs and approx. 3.5k aligned sentence pairs. We show that using DEplain to train a transformer-based seq2seq text simplification model can achieve promising results. We make available the corpus, the adapted alignment methods for German, the web harvester and the trained models here: this https URL

In this paper we consider the neuroscientific theory of the Bayesian brain in the light of adaptive web systems and content personalisation. In particular, we elaborate on neural mechanisms of human decision-making and the origin of lacking reliability of user feedback, often denoted as noise or human uncertainty. To this end, we first introduce an adaptive model of cognitive agency in which populations of neurons provide an estimation for states of the world. Subsequently, we present various so-called decoder functions with which neuronal activity can be translated into quantitative decisions. The interplay of the underlying cognition model and the chosen decoder function leads to different model-based properties of decision processes. The goal of this paper is to promote novel user models and exploit them to naturally associate users to different clusters on the basis of their individual neural characteristics and thinking patterns. These user models might be able to turn the variability of user behaviour into additional information for improving web personalisation and its experience.

In the near future BabyIAXO will be the most powerful axion helioscope, relying on a custom-made magnet of two bores of 70 cm diameter and 10 m long, with a total available magnetic volume of more than 7 m$^3$. In this document, we propose and describe the implementation of low-frequency axion haloscope setups suitable for operation inside the BabyIAXO magnet. The RADES proposal has a potential sensitivity to the axion-photon coupling $g_{a\gamma}$ down to values corresponding to the KSVZ model, in the (currently unexplored) mass range between 1 and 2$~\mu$eV, after a total effective exposure of 440 days. This mass range is covered by the use of four differently dimensioned 5-meter-long cavities, equipped with a tuning mechanism based on inner turning plates. A setup like the one proposed would also allow an exploration of the same mass range for hidden photons coupled to photons. An additional complementary apparatus is proposed using LC circuits and exploring the low energy range ($\sim10^{-4}-10^{-1}~\mu$eV). The setup includes a cryostat and cooling system to cool down the BabyIAXO bore down to about 5 K, as well as appropriate low-noise signal amplification and detection chain.